M. tuberculosis Bioinformatics Workshop
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Agenda and Lectures’ Slides
Day 1: Unix Shell Refresher for Bioinformatics
Day 2: Microbial Genome Assembly (from short and long reads) and Genome Annotation
Day 3: Read mapping and variant calling
Day 4: Phylogenetics/Phylogenomics and Building Reproducible Computational Pipelines
Day 5: Building Reproducible Computational Pipelines
Building Bioinformatics Pipelines with Snakemake
M. tuberculosis Bioinformatics Workshop
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Day 5: Building Reproducible Computational Pipelines
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Day 5: Building Reproducible Computational Pipelines
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Building Reproducible Computational Pipelines using python and snakemake
Building Bioinformatics Pipelines with Snakemake
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